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cytoscan hd/oncoscan array  (Thermo Fisher)


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    Thermo Fisher cytoscan hd/oncoscan array
    Cytoscan Hd/Oncoscan Array, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/oncoscan+array/cytoscan+hd+array/pmc11798607-147-0-3
    Average 90 stars, based on 1 article reviews
    cytoscan hd/oncoscan array - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Spatial transcriptomics reveals segregation of tumor cell states in glioblastoma and marked immunosuppression within the perinecrotic niche
    Article Snippet: .. Chromosomal microarray analysis was performed using the ThermoFisher Oncoscan array. .. DNA was isolated from fresh frozen tissue from each case using the Qiagen DNeasy Blood and Tissue Kit (Catalog Number 65904).

    Article Title: Spatial transcriptomics reveals segregation of tumor cell states in glioblastoma and marked immunosuppression within the perinecrotic niche.
    Article Snippet: .. Chromosomal microarray analysis was performed using the ThermoFisher Oncoscan array. .. DNA was isolated from fresh frozen tissue from each case using the Qiagen DNeasy Blood and Tissue Kit (Catalog Number 65904).

    Article Title: Ninth International Symposium on Hereditary Breast and Ovarian Cancer : May 2-5, 2023 - Centre Mont-Royal, Montréal, Québec, Canada.
    Article Snippet: Ninth International Symposium on Hereditary Breast and Ovarian Cancer May 2–5, 2023 – Centre Mont-Royal, Montréal, Québec, Canada Springer Nature B.V. 2023 Presented by Hereditary Breast and Ovarian Cancer Foundation in collaboration with Program in Cancer Genetics, McGill University

    Mutagenesis:

    Article Title: Gastrointestinal Pathology.
    Article Snippet: .. Tumors from Lynch-like syndrome patients were selected for somatic mutation screening in DNA MMR genes using Custom AmpliSeq panel and sequencing, and for loss of heterozygosity (LOH) using Affymetrix Oncoscan array. ..

    Sequencing:

    Article Title: Gastrointestinal Pathology.
    Article Snippet: .. Tumors from Lynch-like syndrome patients were selected for somatic mutation screening in DNA MMR genes using Custom AmpliSeq panel and sequencing, and for loss of heterozygosity (LOH) using Affymetrix Oncoscan array. ..

    Genome Wide:

    Article Title: Copy Number Variation in Inflammatory Breast Cancer.
    Article Snippet: RNA was amplified using the Sensation kit and profiled using the Affymetrix Human Transcriptome Array 2.0. .. DNA was profiled for genome-wide copy number variation (CNV) using the Affymetrix OncoScan Array and analyzed using the Nexus Chromosome Analysis Suite. ..



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    Image Search Results


    OSCHP plots by Affymetrix OncoScan for whole‐genome CNA. (A) Genomic copy number gain and loss for chromosomes 1 to 22 and X were obtained in nine cases, with LM‐BN regions presented above and LMS regions below. Arrows indicate CNA shared by LM‐BN and LMS, indicating clonality. (Case 1 LM‐BN was tetraploid. A circular dot in case 2 indicates STUMP component.) (B, C) Dot plots represented the number of detectable sites of (B) CNA gain and (C) loss in genomic regions from nine cases. (D) Dot plots for LOH in LM‐BN and LMS. (E, F) Fraction of genome alteration in LMS and LM‐BN regions (E) individually and (F) combined analysis of fraction of genome alteration in LMS and LM‐BN. * p <0.05; ** p <0.01; *** p < 0.001; ns = no statistical significance.

    Journal: The Journal of Pathology

    Article Title: Genomic characterization and histologic analysis of uterine leiomyosarcoma arising from leiomyoma with bizarre nuclei

    doi: 10.1002/path.6379

    Figure Lengend Snippet: OSCHP plots by Affymetrix OncoScan for whole‐genome CNA. (A) Genomic copy number gain and loss for chromosomes 1 to 22 and X were obtained in nine cases, with LM‐BN regions presented above and LMS regions below. Arrows indicate CNA shared by LM‐BN and LMS, indicating clonality. (Case 1 LM‐BN was tetraploid. A circular dot in case 2 indicates STUMP component.) (B, C) Dot plots represented the number of detectable sites of (B) CNA gain and (C) loss in genomic regions from nine cases. (D) Dot plots for LOH in LM‐BN and LMS. (E, F) Fraction of genome alteration in LMS and LM‐BN regions (E) individually and (F) combined analysis of fraction of genome alteration in LMS and LM‐BN. * p <0.05; ** p <0.01; *** p < 0.001; ns = no statistical significance.

    Article Snippet: DNA was analyzed using Affymetrix OncoScan CNA arrays (Thermo Fisher Scientific, Santa Clara, CA, USA).

    Techniques: